| Rank | Club / Country | Points | 1-yr change |
|---|---|---|---|
| 1 | Flora Tallinn Estonia | 1690 | 20 1715 |
| 2 | FCI Levadia Tallinn Estonia | 1666 | 10 1656 |
| 3 | Nomme Kalju FC (EST) Estonia | 1532 | 2 1533 |
| 4 | Paide Linnameeskond Estonia | 1486 | 52 1466 |
| 5 | FC Infonet Tallinn Estonia | 1476 | 6 1476 |
| 6 | Sillamäe Kalev Estonia | 1462 | 7 1462 |
| 7 | Narva Trans Estonia | 1302 | 93 1309 |
| 8 | Tammeka Estonia | 1261 | 25 1263 |
| 9 | Tallinna JK Legion Estonia | 1255 | 12 1255 |
| 10 | Tamme Auto Estonia | 1248 | 45 1248 |
| 11 | Warrior Estonia | 1247 | 44 1247 |
| 12 | FC Kuressaare Estonia | 1243 | 151 1235 |
| 13 | Harju Jalgpallikool Estonia | 1226 | 64 1234 |
| 14 | FC Nõmme United Estonia | 1226 | 368 1250 |
| 15 | Johvi FC Lokomotiv Estonia | 1223 | 20 1223 |
| 16 | Tulevik Viljandi Estonia | 1216 | 12 1216 |
| 17 | Talinna Kalev Estonia | 1214 | 116 1195 |
| 18 | Lootus Estonia | 1213 | 10 1213 |
| 19 | Maardu Linnameeskond Estonia | 1199 | 8 1199 |
| 20 | Rakvere JK Tarvas Estonia | 1190 | 3 1190 |
| 21 | Pärnu JK Vaprus Estonia | 1182 | 25 1174 |
| 22 | Paernu Linnameeskond Estonia | 1177 | 6 1177 |
| 23 | Ajax Lasnamäe Estonia | 1173 | 7 1173 |