| 2001 | Shark XI Congo DR | 1263 | 13 1263 |
| 2002 | Dalian Professional FC China PR | 1263 | 13 1263 |
| 2003 | Chainat FC Thailand | 1263 | 13 1263 |
| 2004 | Atlético Balboa El Salvador | 1263 | 13 1263 |
| 2005 | PSPS Pekanbaru Indonesia | 1263 | 13 1263 |
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| 2006 | Hapoel Nof HaGalil Israel | 1263 | 13 1263 |
| 2007 | Zamfara United FC Nigeria | 1263 | 13 1263 |
| 2008 | EGS Gafsa Tunisia | 1262 | 377 1290 |
| 2009 | Veti Club Congo DR | 1262 | 13 1262 |
| 2010 | Al Hilal Kadougli Sudan | 1262 | 13 1262 |
| 2011 | Al Ahli Khartoum Sudan | 1262 | 13 1262 |
| 2012 | Wuachon United Thailand | 1262 | 14 1262 |
| 2013 | Police Trinidad and Tobago | 1262 | 548 1232 |
| 2014 | Resistencia Sport Club Paraguay | 1262 | 13 1262 |
| 2015 | Olympic Niamey Niger | 1262 | 13 1262 |
| 2016 | Dinamo-Auto Moldova | 1262 | 13 1262 |
| 2017 | Hoang Anh Gia Lai Vietnam | 1262 | 13 1262 |
| 2018 | Parrillas One Honduras | 1262 | 14 1262 |
| 2019 | Harbin Yiteng China PR | 1262 | 14 1262 |
| 2020 | Olympique du Kef Tunisia | 1262 | 14 1262 |
| 2021 | Prison Leopards Zambia | 1261 | 37 1265 |
| 2022 | AEL Kalloni FC Greece | 1261 | 13 1261 |
| 2023 | Al-Bourj FC Lebanon | 1261 | 319 1285 |
| 2024 | FC Wacker Innsbruck Austria | 1261 | 13 1261 |
| 2025 | Botev Vratsa Bulgaria | 1261 | 192 1275 |
| 2026 | EO Sidi Bouzid Tunisia | 1261 | 12 1261 |
| 2027 | Anzoátegui F.C. Venezuela | 1261 | 206 1250 |
| 2028 | Real Kashmir FC India | 1261 | 12 1261 |
| 2029 | US Bitam Tahiti | 1261 | 12 1261 |
| 2030 | RC Bafoussam Cameroon | 1261 | 12 1261 |
| 2031 | Lengthens Zimbabwe | 1261 | 13 1261 |
| 2032 | Chennai City FC India | 1261 | 13 1261 |
| 2033 | Ústí nad Labem Czech Republic | 1261 | 13 1261 |
| 2034 | NIGELEC Niger | 1261 | 14 1261 |
| 2035 | Blessing FC Congo DR | 1261 | 16 1261 |
| 2036 | Tema Youth Ghana | 1260 | 16 1260 |
| 2037 | Cabinda Angola | 1260 | 16 1260 |
| 2038 | FK Krupa Bosnia and Herzegovina | 1260 | 16 1260 |
| 2039 | Victoria Branesti Romania | 1260 | 17 1260 |
| 2040 | BSK Borča Serbia | 1260 | 17 1260 |
| 2041 | Ermis Aradippou Cyprus | 1260 | 17 1260 |
| 2042 | Berekum Arsenal Ghana | 1260 | 17 1260 |
| 2043 | Ifira Black Bird Vanuatu | 1260 | 67 1257 |
| 2044 | Kiglon Zimbabwe | 1260 | 17 1260 |
| 2045 | Lyngby Denmark | 1260 | 111 1268 |
| 2046 | FC Tskhinvali Georgia | 1260 | 16 1260 |
| 2047 | FK Sloga Doboj Bosnia and Herzegovina | 1260 | 86 1255 |
| 2048 | Saint George Ethiopia | 1260 | 15 1260 |
| 2049 | Estudiantes de Mérida Venezuela | 1260 | 90 1266 |
| 2050 | Alianza Universidad Huanuco Peru | 1260 | 318 1283 |