| 2001 | Diaraf Senegal | 1244 | 42 1244 |
| 2002 | FC MK Congo DR | 1244 | 42 1244 |
| 2003 | Səbail FK Azerbaijan | 1244 | 93 1250 |
| 2004 | Union Deportivo Universitario (PAN) Panama | 1244 | 94 1250 |
| 2005 | MSP Batna Algeria | 1244 | 40 1244 |
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| 2006 | Persijap Jepara Indonesia | 1244 | 40 1244 |
| 2007 | Ubon UMT FC Thailand | 1244 | 294 1266 |
| 2008 | Binh Duong Vietnam | 1244 | 39 1244 |
| 2009 | Perseru Serui Indonesia | 1244 | 1 1247 |
| 2010 | Dunbeholden FC Jamaica | 1244 | 100 1250 |
| 2011 | Persik Kediri Indonesia | 1244 | 38 1244 |
| 2012 | Al-Markhiya Sports Club Qatar | 1244 | 102 1250 |
| 2013 | Once Municipal El Salvador | 1244 | 37 1244 |
| 2014 | Skalica Slovakia | 1244 | 37 1244 |
| 2015 | Adzopé Ivory Coast | 1244 | 37 1244 |
| 2016 | CD Audaz El Salvador | 1244 | 687 1300 |
| 2017 | Central Coast Mariners Australia | 1244 | 256 1262 |
| 2018 | AC Rangers Denmark | 1243 | 108 1250 |
| 2019 | Saint-Clément Congo DR | 1243 | 34 1243 |
| 2020 | Tempête Haiti | 1243 | 35 1243 |
| 2021 | Kukesi Albania | 1243 | 36 1243 |
| 2022 | Ethnikos Achnas Cyprus | 1243 | 878 1324 |
| 2023 | Marist Solomon Islands | 1243 | 201 1227 |
| 2024 | Mbabane Swallows Sudan | 1243 | 114 1250 |
| 2025 | Neftchi Uzbekistan | 1243 | 304 1265 |
| 2026 | Araz PFK Azerbaijan | 1243 | 33 1243 |
| 2027 | Szolnoki MÁV Hungary | 1243 | 34 1243 |
| 2028 | El Nasr Tadeen Egypt | 1243 | 147 1252 |
| 2029 | Rewa Fiji | 1243 | 34 1243 |
| 2030 | Kabwe Warriors Zambia | 1243 | 33 1243 |
| 2031 | Sportist Svoge Bulgaria | 1243 | 33 1243 |
| 2032 | Vostok Kazakhstan | 1243 | 34 1243 |
| 2033 | Santos de Angola Angola | 1243 | 34 1243 |
| 2034 | Muungano Congo DR | 1242 | 15 1246 |
| 2035 | Alkali Nassara Niger | 1242 | 36 1242 |
| 2036 | FK Gorno Lisice Macedonia | 1242 | 37 1242 |
| 2037 | Mont Bleu Denmark | 1242 | 127 1250 |
| 2038 | Shelbourne Ireland | 1242 | 38 1242 |
| 2039 | Kerala Blasters FC India | 1242 | 38 1242 |
| 2040 | Kalyani Bharat FC India | 1242 | 38 1242 |
| 2041 | Bray Wanderers Ireland | 1242 | 975 1332 |
| 2042 | Interblock Slovenia | 1242 | 37 1242 |
| 2043 | Haskovo 2009 Bulgaria | 1242 | 37 1242 |
| 2044 | Tasman United New Zealand | 1241 | 28 1242 |
| 2045 | NK Zagreb Croatia | 1241 | 36 1241 |
| 2046 | Erakor Golden Star Vanuatu | 1241 | 49 1241 |
| 2047 | Kazakhmys Kazakhstan | 1241 | 35 1241 |
| 2048 | Hamilton Academical Scotland | 1241 | 518 1286 |
| 2049 | FH Hafnarfjordur Iceland | 1241 | 7 1245 |
| 2050 | Roan United Zambia | 1241 | 34 1241 |