| 2001 | Olympic Niamey Niger | 1262 | 7 1262 |
| 2002 | Dinamo-Auto Moldova | 1262 | 7 1262 |
| 2003 | Hoang Anh Gia Lai Vietnam | 1262 | 7 1262 |
| 2004 | Vejle Boldklub Denmark | 1262 | 100 1256 |
| 2005 | Parrillas One Honduras | 1262 | 6 1262 |
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| 2006 | Harbin Yiteng China PR | 1262 | 6 1262 |
| 2007 | Olympique du Kef Tunisia | 1262 | 6 1262 |
| 2008 | Nyíregyháza Spartacus Hungary | 1262 | 34 1264 |
| 2009 | Prison Leopards Zambia | 1261 | 186 1276 |
| 2010 | AEL Kalloni FC Greece | 1261 | 7 1261 |
| 2011 | Punjab Football Club India | 1261 | 49 1265 |
| 2012 | FC Wacker Innsbruck Austria | 1261 | 7 1261 |
| 2013 | EO Sidi Bouzid Tunisia | 1261 | 7 1261 |
| 2014 | Real Kashmir FC India | 1261 | 7 1261 |
| 2015 | US Bitam Tahiti | 1261 | 8 1261 |
| 2016 | RC Bafoussam Cameroon | 1261 | 8 1261 |
| 2017 | Lengthens Zimbabwe | 1261 | 8 1261 |
| 2018 | Chennai City FC India | 1261 | 8 1261 |
| 2019 | Ústí nad Labem Czech Republic | 1261 | 8 1261 |
| 2020 | Lobos UPNFM Honduras | 1261 | 300 1284 |
| 2021 | NIGELEC Niger | 1261 | 9 1261 |
| 2022 | Blessing FC Congo DR | 1261 | 10 1261 |
| 2023 | Tema Youth Ghana | 1260 | 11 1260 |
| 2024 | St. Johnstone Scotland | 1260 | 127 1270 |
| 2025 | Cabinda Angola | 1260 | 10 1260 |
| 2026 | NAPSA Stars FC Zambia | 1260 | 45 1258 |
| 2027 | FK Krupa Bosnia and Herzegovina | 1260 | 9 1260 |
| 2028 | Victoria Branesti Romania | 1260 | 9 1260 |
| 2029 | BSK Borča Serbia | 1260 | 9 1260 |
| 2030 | Ermis Aradippou Cyprus | 1260 | 9 1260 |
| 2031 | Berekum Arsenal Ghana | 1260 | 9 1260 |
| 2032 | Kiglon Zimbabwe | 1260 | 9 1260 |
| 2033 | FC Tskhinvali Georgia | 1260 | 9 1260 |
| 2034 | Saint George Ethiopia | 1260 | 9 1260 |
| 2035 | Perth Glory Australia | 1260 | 280 1281 |
| 2036 | San Jose Earthquakes United States | 1259 | 759 1320 |
| 2037 | Gabès Tunisia | 1259 | 37 1258 |
| 2038 | Llandudno FC Wales | 1259 | 9 1259 |
| 2039 | Samut Prakan City Thailand | 1259 | 9 1259 |
| 2040 | Najran SC Saudi Arabia | 1259 | 9 1259 |
| 2041 | Siófok Hungary | 1259 | 9 1259 |
| 2042 | Njube Sundowns Zimbabwe | 1259 | 9 1259 |
| 2043 | El Raja Egypt | 1259 | 9 1259 |
| 2044 | Al Fallah Atbara FC Sudan | 1259 | 9 1259 |
| 2045 | Tavriia Ukraine | 1259 | 9 1259 |
| 2046 | GFK Tikvesh Macedonia | 1259 | 63 1255 |
| 2047 | Unirea Alba Iulia Romania | 1259 | 8 1259 |
| 2048 | GreenFuel FC Zimbabwe | 1259 | 163 1250 |
| 2049 | Akzhaiyk Uralsk Kazakhstan | 1259 | 7 1259 |
| 2050 | Příbram Czech Republic | 1259 | 7 1259 |