| 2001 | Asyut Petrol Egypt | 1246 | 52 1246 |
| 2002 | FC Pasching Austria | 1246 | 52 1246 |
| 2003 | Orlando City United States | 1246 | 854 1325 |
| 2004 | J.S. Groupe Bazano Denmark | 1246 | 178 1258 |
| 2005 | AD Chalatenango El Salvador | 1246 | 243 1227 |
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| 2006 | FK Bačka Palanka Serbia | 1246 | 248 1263 |
| 2007 | Al Qadsia Kuwait | 1245 | 48 1245 |
| 2008 | Petro Souths Papua New Guinea | 1245 | 47 1245 |
| 2009 | Club Olympique de Médenine Tunisia | 1245 | 673 1300 |
| 2010 | Flame Lilly Zimbabwe | 1245 | 49 1245 |
| 2011 | Eleven Wise Ghana | 1245 | 49 1245 |
| 2012 | DSK Shivajians India | 1245 | 50 1245 |
| 2013 | Differdange 03 Luxembourg | 1245 | 52 1245 |
| 2014 | Olympique de Missira Mali | 1245 | 53 1245 |
| 2015 | Atlético do Namibe Angola | 1245 | 55 1245 |
| 2016 | Mjøndalen IF Norway | 1245 | 55 1245 |
| 2017 | Underhill Zimbabwe | 1245 | 56 1245 |
| 2018 | Diaraf Senegal | 1244 | 56 1244 |
| 2019 | FC MK Congo DR | 1244 | 56 1244 |
| 2020 | MSP Batna Algeria | 1244 | 56 1244 |
| 2021 | Persijap Jepara Indonesia | 1244 | 56 1244 |
| 2022 | Ubon UMT FC Thailand | 1244 | 297 1266 |
| 2023 | Binh Duong Vietnam | 1244 | 55 1244 |
| 2024 | Al Shorta Al Qadarif Sudan | 1244 | 102 1250 |
| 2025 | Persik Kediri Indonesia | 1244 | 55 1244 |
| 2026 | Al-Markhiya Sports Club Qatar | 1244 | 104 1250 |
| 2027 | Once Municipal El Salvador | 1244 | 54 1244 |
| 2028 | Skalica Slovakia | 1244 | 54 1244 |
| 2029 | Adzopé Ivory Coast | 1244 | 54 1244 |
| 2030 | AC Rangers Denmark | 1243 | 108 1250 |
| 2031 | Saint-Clément Congo DR | 1243 | 53 1243 |
| 2032 | Tempête Haiti | 1243 | 54 1243 |
| 2033 | Al-Kharitiyat Qatar | 1243 | 497 1286 |
| 2034 | Kukesi Albania | 1243 | 54 1243 |
| 2035 | Ethnikos Achnas Cyprus | 1243 | 885 1324 |
| 2036 | Marist Solomon Islands | 1243 | 219 1227 |
| 2037 | Mbabane Swallows Sudan | 1243 | 115 1250 |
| 2038 | Neftchi Uzbekistan | 1243 | 305 1265 |
| 2039 | Jocoro FC El Salvador | 1243 | 117 1250 |
| 2040 | Araz PFK Azerbaijan | 1243 | 50 1243 |
| 2041 | Szolnoki MÁV Hungary | 1243 | 51 1243 |
| 2042 | El Nasr Tadeen Egypt | 1243 | 149 1252 |
| 2043 | Rewa Fiji | 1243 | 51 1243 |
| 2044 | Kabwe Warriors Zambia | 1243 | 50 1243 |
| 2045 | Sportist Svoge Bulgaria | 1243 | 50 1243 |
| 2046 | Erakor Golden Star Vanuatu | 1243 | 80 1241 |
| 2047 | Vostok Kazakhstan | 1243 | 50 1243 |
| 2048 | Santos de Angola Angola | 1243 | 50 1243 |
| 2049 | Glentoran Northern Ireland | 1242 | 127 1250 |
| 2050 | Muungano Congo DR | 1242 | 0 1246 |