| 2001 | Persijap Jepara Indonesia | 1244 | 46 1244 |
| 2002 | Ubon UMT FC Thailand | 1244 | 289 1266 |
| 2003 | Binh Duong Vietnam | 1244 | 45 1244 |
| 2004 | Ohod Saudi Arabia | 1244 | 675 1300 |
| 2005 | Persik Kediri Indonesia | 1244 | 45 1244 |
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| 2006 | Al-Markhiya Sports Club Qatar | 1244 | 96 1250 |
| 2007 | Once Municipal El Salvador | 1244 | 44 1244 |
| 2008 | Skalica Slovakia | 1244 | 44 1244 |
| 2009 | Adzopé Ivory Coast | 1244 | 44 1244 |
| 2010 | Al-Kharitiyat Qatar | 1244 | 486 1286 |
| 2011 | AC Rangers Denmark | 1243 | 101 1250 |
| 2012 | Saint-Clément Congo DR | 1243 | 42 1243 |
| 2013 | Tempête Haiti | 1243 | 43 1243 |
| 2014 | Kukesi Albania | 1243 | 44 1243 |
| 2015 | Deportivo Chiantla Guatemala | 1243 | 686 1300 |
| 2016 | PSMS Indonesia | 1243 | 106 1250 |
| 2017 | Ethnikos Achnas Cyprus | 1243 | 873 1324 |
| 2018 | Marist Solomon Islands | 1243 | 207 1227 |
| 2019 | Mbabane Swallows Sudan | 1243 | 109 1250 |
| 2020 | Neftchi Uzbekistan | 1243 | 299 1265 |
| 2021 | GOŠK Gabela Bosnia and Herzegovina | 1243 | 133 1234 |
| 2022 | NK Istra 1961 Croatia | 1243 | 438 1281 |
| 2023 | Araz PFK Azerbaijan | 1243 | 37 1243 |
| 2024 | Szolnoki MÁV Hungary | 1243 | 38 1243 |
| 2025 | El Nasr Tadeen Egypt | 1243 | 144 1252 |
| 2026 | Rewa Fiji | 1243 | 38 1243 |
| 2027 | Kabwe Warriors Zambia | 1243 | 37 1243 |
| 2028 | Sportist Svoge Bulgaria | 1243 | 37 1243 |
| 2029 | Vostok Kazakhstan | 1243 | 38 1243 |
| 2030 | Harbour View FC Jamaica | 1243 | 108 1235 |
| 2031 | Santos de Angola Angola | 1243 | 37 1243 |
| 2032 | Muungano Congo DR | 1242 | 12 1246 |
| 2033 | Alkali Nassara Niger | 1242 | 39 1242 |
| 2034 | Perseru Serui Indonesia | 1242 | 25 1247 |
| 2035 | FK Gorno Lisice Macedonia | 1242 | 39 1242 |
| 2036 | Mont Bleu Denmark | 1242 | 126 1250 |
| 2037 | Shelbourne Ireland | 1242 | 40 1242 |
| 2038 | Sioni Bolnisi Georgia | 1242 | 49 1249 |
| 2039 | Kerala Blasters FC India | 1242 | 39 1242 |
| 2040 | Kalyani Bharat FC India | 1242 | 39 1242 |
| 2041 | Interblock Slovenia | 1242 | 39 1242 |
| 2042 | Haskovo 2009 Bulgaria | 1242 | 39 1242 |
| 2043 | Glentoran Northern Ireland | 1241 | 133 1250 |
| 2044 | NK Zagreb Croatia | 1241 | 38 1241 |
| 2045 | Erakor Golden Star Vanuatu | 1241 | 51 1241 |
| 2046 | Kazakhmys Kazakhstan | 1241 | 37 1241 |
| 2047 | FH Hafnarfjordur Iceland | 1241 | 5 1245 |
| 2048 | Roan United Zambia | 1241 | 37 1241 |
| 2049 | Wassaman United Ghana | 1241 | 38 1241 |
| 2050 | JSK Chabab Kasba Tadla Morocco | 1241 | 38 1241 |